Protein Alignment C15 and Hoxb2

DIOPT Version :10

• Sequence 1: NP_476873.2
• Gene: C15 / 42544
• FlyBaseID: FBgn0004863
• Length: 339
• Species: Drosophila melanogaster
• Sequence 2: NP_001386664.1
• Gene: Hoxb2 / 100361765
• RGDID: 2319509
• Length: 355
• Species: Rattus norvegicus
• Alignment Length: 227
• Identity: 68/227 - (29%)
• Similarity: 91/227 - (40%)
• Gaps: 45/227 - (19%)

  Fly   147 AALYSYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQ--AVKDRLAAAFPI-------A 202
            |:....|.....|..|..||.||   ||..|.|......:..:  |.|...:||.|.       |
  Rat    61 ASTLQRPGSQKPAGDGPALRPPP---PLPVAPPAPEFPWMKEKKSAKKPSQSAATPSPAASSVRA 122

  Fly   203 RRIGHPYQNRTPPK-----RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 262
            ..:|.|......|:     .::.||::|..|:.||||.||..|||....|..:|..|.:|:.|||
  Rat   123 SGVGSPSDGPGLPESGGSGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVK 187

  Fly   263 TWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEA--------ISKG-----------FAPPSA 308
            .||||||.|.:|||......:.:...   ||.|.:|        :|.|           |.|..|
  Rat   188 VWFQNRRMKHKRQTQHREPPDGEPGG---LSAQDDAGEPAEEPTVSPGDVASHRLREACFLPAEA 249

  Fly   309 PLGSQGGVNGAPLA-ALHGLQPWAEASHAAGC 339
            ..|.:|.....|.| ||..:     .:.:.||
  Rat   250 AQGPRGAPPPLPPATALESV-----GASSPGC 276

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
C15	NP_476873.2	COG5576	<196..315	CDD:227863	47/149 (32%)
		Homeodomain	218..274	CDD:459649	27/55 (49%)
Hoxb2	NP_001386664.1	Homeodomain	143..199	CDD:459649	27/55 (49%)