DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fancm and IRC3

DIOPT Version :9

Sequence 1:NP_001262806.1 Gene:Fancm / 42543 FlyBaseID:FBgn0038889 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_010619.3 Gene:IRC3 / 851932 SGDID:S000002740 Length:689 Species:Saccharomyces cerevisiae


Alignment Length:844 Identity:157/844 - (18%)
Similarity:270/844 - (31%) Gaps:322/844 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LRSYQQTIVQSAL------FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQ 116
            ||.|||..:.:.:      .|...|.|.||.|||.|.:.::....:.|.|             .:
Yeast    33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFK-------------ER 84

  Fly   117 QIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQV-VHSDM--LEADGECS----- 173
            |.:....|:....|..:|.|..|           |::|   |.: ||.:|  .:.|.|.|     
Yeast    85 QGNFKSLILVHRRELALQATATL-----------KKIF---PDLKVHIEMGKYDCDIEDSDVIVA 135

  Fly   174 -----------FPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFR--MLALSATPGRTMED 225
                       :...|:.||::||||.:... :|..:.|...|.....:  ::..|||..|.  |
Yeast   136 SVQTLIRRLHKYDTNSVNLIIIDEAHHSVAN-SYRSILDHFKASTAETKIPVIGFSATFERA--D 197

  Fly   226 VAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEAE 290
            ..|:               |:.:...::.|.|                  |::|:.  :.|.||:
Yeast   198 KRAL---------------SMVMDKIVYHRGI------------------LEMIDD--KWLCEAK 227

  Fly   291 IFKGNKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMGNFAMCISMYHSLDLMERHGLRVFVNN 355
            .     .:|...:.|.:.||                                             
Yeast   228 F-----TSVKIEADLSDVKS--------------------------------------------- 242

  Fly   356 FDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTNGEVPPLPSDLDFGHAKYEK-L 419
             .|||     |.||...:|.|..|       .|.:...|:.                |.|.|| |
Yeast   243 -TADD-----FQLAPLSSLMNTKE-------INEVILKTYL----------------HKKQEKSL 278

  Fly   420 RQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQ 484
            :..|             :|...:..|..:|:|            |...|  :...|..:..:|::
Yeast   279 KSTL-------------LFGVDKAHVQSLHKL------------FKDNG--INTDYVTSDTKQIE 316

  Fly   485 ---IMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTR--FIQRIGRTGRKKNGEVV 544
               |:..|::|.:.||:...|..||.|:..::   |..:|....:|  .||.|||          
Yeast   317 RDNIIQKFKNGETEVLMNCGIFTEGTDMPNID---CILLCRPTKSRSLLIQMIGR---------- 368

  Fly   545 MLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNPRMVPSKFQPKCEEKHMEPVAEEKP 609
                 |......||.....|.|..    |||..:|        .|:....:.::...:....|..
Yeast   369 -----GLRLHHSKDHCHIIDFIGA----SSVGVVS--------APTLLGIRSDDIEFDDATVEDL 416

  Fly   610 KPKSAAKTKESRKRKQPVAQTGSLRKYFKESPPTESQQGILQGIKP-YQMSEASQQLVKQQVLRR 673
            |                 |..|.:         ...||.|.:.::. :|..||:.:.|.:   |.
Yeast   417 K-----------------AIQGEI---------IAKQQKIDERLRALFQTDEAAMENVTE---RN 452

  Fly   674 SV------------------TLKNFFGESQASSTLTSSQ---EDVQRLRKLTRLLQSSKPFVSDS 717
            ||                  :.:||   :|::::..|.:   |..:.::::..|:.|..|:|..:
Yeast   453 SVADWIHSANSVDLTLCSFDSFRNF---TQSNNSYPSGKEFDEASEAVKEMELLMNSQYPWVKFA 514

  Fly   718 KDLMSHLQDDHLP----RQIKLYLLKSNPEFLRETHLKMQVQSELNIAD---DRLNSRQRRTKNN 775
            .:...      ||    ..:::|..||..:.....||||..|....|.:   |.:.....:..|.
Yeast   515 SNAWG------LPLKGKNHLRIYKEKSEDKLSMVYHLKMYRQLPCFITNKYADYVPKSIIKDANL 573

  Fly   776 YQLLLDICDGMDQMNELLQGD--------------------NSGAEISFRDELNPIYNQSPKKF 819
            :.::..:...::.:|..|:|.                    :...:..|| :|..:|.:|.|.|
Yeast   574 WNVMSKVEKIINTLNSDLEGQTMQYQAISSKYSKWRQTVPTSKQRDFVFR-KLKKVYGESSKDF 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FancmNP_001262806.1 MPH1 43..608 CDD:224036 111/582 (19%)
ResIII 55..221 CDD:282678 44/189 (23%)
FANCM_ID 269..378 CDD:277190 17/108 (16%)
Helicase_C 417..539 CDD:278689 29/127 (23%)
IRC3NP_010619.3 SSL2 19..389 CDD:223989 106/548 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R301
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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