DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fancm and Dhx58

DIOPT Version :9

Sequence 1:NP_001262806.1 Gene:Fancm / 42543 FlyBaseID:FBgn0038889 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_084426.2 Gene:Dhx58 / 80861 MGIID:1931560 Length:678 Species:Mus musculus


Alignment Length:596 Identity:139/596 - (23%)
Similarity:242/596 - (40%) Gaps:125/596 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIH 119
            :.||.||..::..|| .||.::.||||.|||..||.|.........:||:|.:.....||||  |
Mouse     1 MELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ--H 63

  Fly   120 ASQKIMPFPSEDTV-QLTGQLPRPKRAELWA-SKRVFFATPQVVHSDMLEADGECSFPFGSIKLI 182
            |.:.........|| .|:|.:.......|.| |..:...|.:::...:..::.:.........||
Mouse    64 AEEFRRMLDKHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEHVELREFSLI 128

  Fly   183 VVDEAHRAKGRYAYTQVADCLMARNRYF-----------RMLALSATPGR--------TMEDVAA 228
            ||||.|.......|..:.      :||.           ::|.|:|:||.        .::.:..
Mouse   129 VVDECHHTHKDTVYNTIL------SRYLEQKLKKAEPLPQVLGLTASPGTGGATKLQGAIDHILQ 187

  Fly   229 VCRNLYISNLQVRWDTSIDVQP-------YIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQL 286
            :|.||         ||...:.|       .:|...........:.|.::|...|::.:...:.|.
Mouse   188 LCANL---------DTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLMNQIHQQ 243

  Fly   287 MEAEIFKGNKGTVSRNSLLFEQ------KSFVERSAQGQRHPDHNIIMGNFAMCISMYHSL---- 341
            :|....|...||     .::||      |...|...|.||         .:|:.:..|:..    
Mouse   244 LEMPDLKQQFGT-----QMYEQQVVQLCKDAAEAGLQEQR---------VYALHLRRYNDALFIH 294

  Fly   342 -DLMERHGLRVFVNNFDADDDGREKFVLARDGNL------RNLVEQVRQELGANPLDYTTHAMTN 399
             .:..|..|.:..:.:|.:...:.:.|.|....|      :|::.|:......||          
Mouse   295 DTVRARDALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNVLGQLAARGPENP---------- 349

  Fly   400 GEVPPLPSDLDFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVL----- 459
                           |.|.|.::|::.|.:...:|.|:|...|::...: .|.|:.:|.|     
Mouse   350 ---------------KLEMLERILLKQFGSPGHTRGIIFTRTRQTASSL-LLWLRQQPCLQTVGI 398

  Fly   460 RPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTN 524
            :|:..:|.|:|..::: :|||.|.:::.:||.|..::|||||:.|||||:.:..::|.:.:. ||
Mouse   399 KPQMLIGAGNTSQSTH-MTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLL-TN 461

  Fly   525 PTRFIQRIGRTGRKKNGEVV--MLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNPRM 587
            ....:|   ..||.:.|:.|  .|.|||..:  :|..|.|  :..:.|:..:|..:.      :|
Mouse   462 EISMVQ---ARGRARAGQSVYSFLATEGSRE--MKRELTN--EALEVLMEKAVAAVQ------KM 513

  Fly   588 VPSKFQPKCEE 598
            .|.:|:.|..:
Mouse   514 DPDEFKAKIRD 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FancmNP_001262806.1 MPH1 43..608 CDD:224036 139/596 (23%)
ResIII 55..221 CDD:282678 49/178 (28%)
FANCM_ID 269..378 CDD:277190 23/125 (18%)
Helicase_C 417..539 CDD:278689 39/126 (31%)
Dhx58NP_084426.2 ResIII 1..170 CDD:282678 48/176 (27%)
MPH1 2..550 CDD:224036 139/595 (23%)
DECH box 131..134 2/2 (100%)
MDA5_ID 227..345 CDD:277189 24/131 (18%)
Helicase_C 350..475 CDD:278689 40/130 (31%)
LGP2_C 552..664 CDD:276944
RNA-binding. /evidence=ECO:0000250 572..655
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1111
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R301
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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