DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fancm and Ifih1

DIOPT Version :9

Sequence 1:NP_001262806.1 Gene:Fancm / 42543 FlyBaseID:FBgn0038889 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_082111.2 Gene:Ifih1 / 71586 MGIID:1918836 Length:1025 Species:Mus musculus


Alignment Length:756 Identity:152/756 - (20%)
Similarity:302/756 - (39%) Gaps:212/756 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WMDDD---EDLVAALAMHEEQKSEDADGTRWEHCDEACDGFDMATGHN----------------- 49
            |..||   |......::..|..:..|:|:      .:|  ||.:.|||                 
Mouse   238 WNVDDILPEASCTDSSVTTESDTSLAEGS------VSC--FDESLGHNSNMGRDSGTMGSDSDES 294

  Fly    50 -----WIYPN-NLPLRSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFY----RWYPKGK 103
                 .:.|. .|.||.||..:.|.|| .||.::.||||.|||.:|..:..:..    :....||
Mouse   295 VIQTKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGK 359

  Fly   104 IVFMAPTRPLVSQQIHASQKIMPF---------PSEDTVQLTGQLPRPKRAELWASKRVFFATPQ 159
            ::.:. .:.::::|:. .::..|:         .|.|| ||....|     |:..|..|..:|.|
Mouse   360 VIVLV-NKVMLAEQLF-RKEFNPYLKKWYRIIGLSGDT-QLKISFP-----EVVKSYDVIISTAQ 416

  Fly   160 VVHSDM--LEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFR----------- 211
            ::.:.:  ||:..:.........||::||.|.......|..:      ..||.:           
Mouse   417 ILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNI------MRRYLKQKLRNNDLKKQ 475

  Fly   212 ---------MLALSATPG--------RTMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRT 259
                     :|.|:|:||        ...:.:..:|.||....:                :|::.
Mouse   476 NKPAIPLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTI----------------KTVKE 524

  Fly   260 IVVSLKERIKEP---------------RERLLQI---IEPYLRQLMEAEIFKGNKGT--VSRNSL 304
            .:..||.:||||               :|:||:|   |:.|.::...::.     ||  ..:.::
Mouse   525 NLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDF-----GTQHYEQWAI 584

  Fly   305 LFEQKSFVERSAQGQRHPDHNIIMGNFAMCISMYHSLDLMERHG-LRVFVNNFDADDDGREKFVL 368
            ..|:|:..:.:.:.:...:|   :..:...:.:..::.:::.:. |..|..     |:..:||.:
Mouse   585 QMEKKAAKDGNRKDRVCAEH---LRKYNEALQINDTIRMIDAYSHLETFYT-----DEKEKKFAV 641

  Fly   369 ARDGNLRN---------LVEQVRQELGANPLDYTTHAMTN------GEVPPLPSDLDFGHAKYEK 418
            ..|.:..:         |...|::.|   .||.|...:.|      ..:..|..:..:.:.|..|
Mouse   642 LNDSDKSDDEASSCNDQLKGDVKKSL---KLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIK 703

  Fly   419 LRQVLVQHF-QANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQG----STVGASYA-- 476
            ||..:::.| ::...||.|:|.:.|:|...:.:.::::..      |...|    ..:||.::  
Mouse   704 LRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAK------FAEVGVKAHHLIGAGHSSE 762

  Fly   477 ---LTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGRK 538
               :||.:|.::::.||:|..|:|:||::.|||||:.|..:::.:.:. ||....:|..|| .|.
Mouse   763 VKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLV-TNEIAMVQARGR-ARA 825

  Fly   539 KNGEVVMLVTEG---REQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNPRMVPSKFQPKCEEKH 600
            .....|::.:.|   .|::::.|       ..:|::..::.::    ||  |.|.::..|..|..
Mouse   826 DESTYVLVTSSGSGVTEREIVND-------FREKMMYKAINRV----QN--MKPEEYAHKILELQ 877

  Fly   601 MEPVAEEKPKPKSAAKTKESRKRKQPVAQTGSLRKYFKESP 641
            ::.:.|:|.|.|.                  |:.|.:.::|
Mouse   878 VQSILEKKMKVKR------------------SIAKQYNDNP 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FancmNP_001262806.1 MPH1 43..608 CDD:224036 137/680 (20%)
ResIII 55..221 CDD:282678 48/209 (23%)
FANCM_ID 269..378 CDD:277190 20/138 (14%)
Helicase_C 417..539 CDD:278689 36/131 (27%)
Ifih1NP_082111.2 DD 8..99 CDD:301326
DD 111..200 CDD:301326
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..297 3/23 (13%)
ResIII 306..492 CDD:282678 46/199 (23%)
MPH1 307..873 CDD:224036 129/632 (20%)
MDA5_ID 549..694 CDD:277189 25/160 (16%)
Helicase_C 708..823 CDD:278689 32/122 (26%)
MDA5_C 900..1015 CDD:276945 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1111
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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