DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fancm and fml1

DIOPT Version :9

Sequence 1:NP_001262806.1 Gene:Fancm / 42543 FlyBaseID:FBgn0038889 Length:1489 Species:Drosophila melanogaster
Sequence 2:NP_593348.2 Gene:fml1 / 2543668 PomBaseID:SPAC9.05 Length:834 Species:Schizosaccharomyces pombe


Alignment Length:914 Identity:271/914 - (29%)
Similarity:439/914 - (48%) Gaps:172/914 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DVNWMDDDEDLVAALAMHEEQKSEDADGTRWEHCDEACDG-----------FDMATGHNWIYPNN 55
            |.:|.:.|..:|..:   |.:...:..|......||..|.           .|.:....|:||.|
pombe     9 DEDWDELDTQVVDKI---ENEYHNNTIGLNGYSVDEYFDANDSNRYRLQHELDESAAQQWVYPIN 70

  Fly    56 LPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHA 120
            :..|.||..|||.|||:|.||.|||||||||||||||.|:.||:||..|||||||:|||:||:.|
pombe    71 VSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQMEA 135

  Fly   121 SQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSFPFGSIKLIVVD 185
            ..||...|...|.:|:|.:|...|.:.:.|:.|||.|||.:.:|:  ..|.|...  .|..:|:|
pombe   136 CYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDI--KHGICDRT--RISCLVID 196

  Fly   186 EAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTSIDVQP 250
            ||||:.|.|||.:|...|...|:.||:||||||||..:|.:..|..:|:||.:::|.:.|||:..
pombe   197 EAHRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEAIQNVIDSLHISRIEIRTENSIDISQ 261

  Fly   251 YIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEAEIFK-GNKGTVSRNSLLFEQKSFVER 314
            |:.::.:....|.|...|.:.|:|...|:||.|::|.:...:: .|...::..:::..:::|:..
pombe   262 YVQKKEVDFFPVDLSAEITDIRDRFSSILEPMLQKLNKGNYYRIQNAKDITSFTVVQAKQAFLAM 326

  Fly   315 SAQGQRHPDHN--IIMGNFAMCISMYHSLDLMERHGLRVFVNNFDADDDGREKFVLARDGNLRNL 377
            |  ||..|.:.  .|:..|....:..:.|:|:..||:|.|...                      
pombe   327 S--GQNFPANQKWDILNTFDALATFAYPLNLLLNHGIRPFYQK---------------------- 367

  Fly   378 VEQVRQELGANPLDYTTHAMTNGEVPPLPSDLDF--------GHAKYEKLRQVLVQHF--QANPD 432
            :.:|.:|.......|....:.:....||..|::.        ||.|.|.|.:::.::|  :...|
pombe   368 LREVEEECFVGRSGYKKRIINHENYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQTKD 432

  Fly   433 SRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVL 497
            :|.::|.|.|.|...|.|.|.:..|.:||..|:|| |.|..:..::||.|.:.:..|:.|..|.|
pombe   433 TRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQ-SAVRKAAGMSQKLQNETVKQFQKGEVNTL 496

  Fly   498 VATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQ---QVLKDV 559
            :||||||||||:|||:||:|:| .|.:|.|.:||:||||||:.|.:.||:|.|:|:   :..||.
pombe   497 IATSIGEEGLDIGEVDMIICYD-ASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAKWERAKDA 560

  Fly   560 LANKDQINKKLLNSSVVK---LSLYEQNPRMVPSKFQPKCEEKHME-PVAEEK----PKPKSAAK 616
            .        :.|..::|.   |||.|::.|::|.||:|.|:::.:| |...|:    || |...:
pombe   561 Y--------RTLQDNIVSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVAPK-KVQLR 616

  Fly   617 TKESRKRKQPVAQTGSLRKYFKESPPTESQQGILQGIK-PYQMSEASQQLVKQQVLR--RSVTLK 678
            ||..:|...|   ..:|..:...|...:.::.:.:..: |:::...:..:.:::.|.  :.|.|:
pombe   617 TKIKKKFFMP---ENALNGFITASALGKPKRALAKSEESPFEICPVTYSIEQEKKLEKYKRVCLR 678

  Fly   679 NFFGESQASSTLTSSQEDVQRLRKLTRLLQSSK-PFVSDSKDLMSHLQDDHLPRQIKLYLLKSNP 742
            ..               |:.|.|:|::|..:.: |....:|.:.|.|      :.:.....:...
pombe   679 GL---------------DIHRNRRLSQLSVTGRIPHSLATKSIHSFL------KHLNTIDSQKAQ 722

  Fly   743 EFLRETHLKMQVQSELNIADDRLNSRQRRTKNNYQLLLDICDGMDQMNELLQGDNSGAEISFRDE 807
            |:.||.:.:.||.:        :||..|.||            ..:|::            ||..
pombe   723 EWRREINNQFQVSN--------INSTDRDTK------------QPKMHD------------FRQP 755

  Fly   808 LNP---------------IYNQSPKKFDTICEQIFDGLNEHGLNSNNFELKQDLLE---KLELRN 854
            |:|               .|::|...:|               |:||  |::||.:   .:..||
pombe   756 LHPNPMTTLKRKGQHNSFSYDKSTLFYD---------------NNNN--LEEDLPDVNISISSRN 803

  Fly   855 LETT 858
            .|.:
pombe   804 EEAS 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FancmNP_001262806.1 MPH1 43..608 CDD:224036 212/584 (36%)
ResIII 55..221 CDD:282678 87/165 (53%)
FANCM_ID 269..378 CDD:277190 21/111 (19%)
Helicase_C 417..539 CDD:278689 54/123 (44%)
fml1NP_593348.2 MPH1 58..613 CDD:224036 215/593 (36%)
DEXDc 87..230 CDD:238005 75/146 (51%)
FANCM_ID 280..396 CDD:277190 25/139 (18%)
HELICc 412..544 CDD:238034 57/133 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 165 1.000 Domainoid score I939
eggNOG 1 0.900 - - E1_COG1111
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004412
OrthoInspector 1 1.000 - - otm47313
orthoMCL 1 0.900 - - OOG6_102422
Panther 1 1.100 - - LDO PTHR14025
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R301
SonicParanoid 1 1.000 - - X2862
TreeFam 1 0.960 - -
109.800

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