DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fancm and ddx58

DIOPT Version :9

Sequence 1:NP_001262806.1 Gene:Fancm / 42543 FlyBaseID:FBgn0038889 Length:1489 Species:Drosophila melanogaster
Sequence 2:XP_031746242.1 Gene:ddx58 / 100495207 XenbaseID:XB-GENE-980097 Length:967 Species:Xenopus tropicalis


Alignment Length:641 Identity:139/641 - (21%)
Similarity:267/641 - (41%) Gaps:116/641 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 NNLPLRSYQQTIVQSALF-KNTLVVLPTGLGKTFIAAVVMYNFYRWYP---KGKIVFMAPTRPLV 114
            :.:.||.||:.:.:.|.. |||::..|||.|||.::.|:..:.....|   |||::|||...|:.
 Frog   275 STVKLRKYQEELAKPAFTGKNTMICAPTGSGKTLVSLVICKHHLECMPNGKKGKVLFMATKVPVY 339

  Fly   115 SQQIHASQKIMPFPSEDTVQLTGQLPRPKRAE------LWASKRVFFATPQVVHSDMLEADGECS 173
            .||.....|...........::|:     .||      :..:..:...|||::.:.:...    :
 Frog   340 EQQKDVFCKYFEGSRYKVEGVSGE-----TAENFPVGLVIENSDIIILTPQILVNCLQSG----T 395

  Fly   174 FPFGSI-KLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSAT-PGRTMEDVAAVCRNLYIS 236
            .|..|: .:::.||.|...|.:.|    :.||     |..|.|... ||..:..:..:..::...
 Frog   396 VPSISVFSMMIFDECHNTIGNHPY----NVLM-----FSYLDLKLNMPGVALPQIIGLTASVGTG 451

  Fly   237 NLQVRWDTSIDVQPYIH--RRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEAEIFKGNKGTV 299
            ..:       .:...||  .|...::.:.:...:||.:|.|.:.:....:.:..|...:.:..|.
 Frog   452 KAK-------SLPEAIHYITRLCASLNIEVISTVKEHKEELAETVFKPTKSISIAPQRENDSFTA 509

  Fly   300 SRNSL--------------LFEQKSFVERSAQGQRH----------------PDHNIIMGNFAMC 334
            ..:.:              |:...:...||...|::                .|.|..|   .:|
 Frog   510 IMSEIMSETEKMAKDFYPELYSMSNIQNRSYGTQKYEQWIVDTQKKCCVLQMDDKNKEM---RIC 571

  Fly   335 ISMYHSLDLMERHGLRVFVNNFDADDDGREKFVLARDGNLRNLVEQVRQELGA-NPLDYTTHAMT 398
            .|::...:.:.::...:.:|     ||.|.|..|   ..|.|....::.  |: |.::...:.|.
 Frog   572 SSLFTYTEHLRKYNDSIMIN-----DDARTKDAL---DFLENFFNNMKN--GSFNEIEQKLYNMF 626

  Fly   399 NGEVPPLPSDLDFG----HAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPV- 458
            ..::|.|   ||..    :.|.|:|:.:|.:.:..||::|:::|.:.|..|..: :..::..|: 
 Frog   627 QDKLPQL---LDISKNNINPKLEELQFILDESYHENPETRSLLFVKTRSLVSAL-KTWIEENPLL 687

  Fly   459 --LRPRCFVGQGSTVGASYALTQKQQLQIMTDFR-SGTSNVLVATSIGEEGLDVGEVEMIVCFDI 520
              |:|...:|: |....|..:|...|...:..|: |..|.:|:|||:.:||:|:....:::.::.
 Frog   688 QFLKPEILIGR-SKRNESLGMTLSSQKGALEAFKNSAESKLLIATSVADEGIDIQACNLVLLYEY 751

  Fly   521 CSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNP 585
            .. |.|:.||..|| ||.|:.:..::.::|.|  .:|:   ..:.:.:||:|.:|..|...|   
 Frog   752 VG-NVTKMIQVRGR-GRAKDSKCFLITSKGEE--AIKE---ENNLLREKLMNEAVTVLQKEE--- 806

  Fly   586 RMVPSKFQPKC-----EEKHMEPVAE--EKPKPKSAAKTKESRKRKQPVAQTGSLR 634
               |..|..|.     ||||:..:.:  |:||.....:....:|.|.....|..:|
 Frog   807 ---PESFVNKILEIQKEEKHIRDMKKLFERPKATEGNRKLLCKKCKTYACNTDDIR 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FancmNP_001262806.1 MPH1 43..608 CDD:224036 132/613 (22%)
ResIII 55..221 CDD:282678 45/177 (25%)
FANCM_ID 269..378 CDD:277190 23/138 (17%)
Helicase_C 417..539 CDD:278689 35/125 (28%)
ddx58XP_031746242.1 DD 4..88 CDD:417479
CARD_2 100..190 CDD:407008
MPH1 276..838 CDD:224036 135/617 (22%)
DEXHc_RIG-I_DDX58 277..478 CDD:350831 49/225 (22%)
RLR_C_like 840..951 CDD:416942 4/20 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R301
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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