DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and HDG2

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_172015.1 Gene:HDG2 / 839256 AraportID:AT1G05230 Length:721 Species:Arabidopsis thaliana


Alignment Length:211 Identity:50/211 - (23%)
Similarity:71/211 - (33%) Gaps:78/211 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 KKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIF 366
            |..||.|..|||                    ..||..|.:        ||||..|  .|..||.
plant    43 KSGSENQEGGSG--------------------NDQDPLHPN--------KKKRYHR--HTQLQIQ 77

  Fly   367 ELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKR------------DIEELKKDF 419
            |:|..|....:.....|.:::..|.|...||..||||:|.:.|.            :.|:|:.  
plant    78 EMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHENSHLRAENEKLRN-- 140

  Fly   420 DSVKV----------------------FSAHKSFLENVNDLSILKKKPMHESDMVGLAAAAAAAG 462
            |:::.                      |..|:..|||.        :...|.|.:   :|.||..
plant   141 DNLRYREALANASCPNCGGPTAIGEMSFDEHQLRLENA--------RLREEIDRI---SAIAAKY 194

  Fly   463 MVVPVPGSVPMGGAPP 478
            :..|| .:.|:...||
plant   195 VGKPV-SNYPLMSPPP 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 18/55 (33%)
HDG2NP_172015.1 Homeodomain 65..121 CDD:459649 20/57 (35%)
MreC <130..>202 CDD:480808 15/85 (18%)
START_ArGLABRA2_like 246..464 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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