DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and HDG9

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_197234.1 Gene:HDG9 / 831598 AraportID:AT5G17320 Length:718 Species:Arabidopsis thaliana


Alignment Length:115 Identity:31/115 - (26%)
Similarity:53/115 - (46%) Gaps:9/115 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   329 TKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLS 393
            |:| |.|.|:...|:.:| ...:.::|.....||.||..||..|....:.....|..:...|.|.
plant     4 TRD-DNSSDERENDVDAN-TNNRHEKKGYHRHTNEQIHRLETYFKECPHPDEFQRRLLGEELNLK 66

  Fly   394 NAQVITWFQNRRAKQKRDIEELKKD-----FDSVKVFSAHKSFLENVNDL 438
            ..|:..||||:|.:.|...|  |.|     .:::|:...::|..:.:|::
plant    67 PKQIKFWFQNKRTQAKSHNE--KADNAALRAENIKIRRENESMEDALNNV 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 17/55 (31%)
HDG9NP_197234.1 Homeodomain 27..82 CDD:459649 17/54 (31%)
START_ArGLABRA2_like 239..460 CDD:176884
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.