DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and PDF2

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_567274.1 Gene:PDF2 / 825828 AraportID:AT4G04890 Length:743 Species:Arabidopsis thaliana


Alignment Length:181 Identity:50/181 - (27%)
Similarity:69/181 - (38%) Gaps:56/181 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 ERSQRSSSSN-----GSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDAL 324
            :.:.:|:|.|     ||.|          :...|:.|:|     .:.|.|:|             
plant    14 DMTPKSTSDNDLGITGSRE----------DDFETKSGTE-----VTTENPSG------------- 50

  Fly   325 FQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAAS 389
                    :|.||.      |.||. ||||..|  .|..||.|||..|....:.....|.|::..
plant    51 --------EELQDP------SQRPN-KKKRYHR--HTQRQIQELESFFKECPHPDDKQRKELSRD 98

  Fly   390 LGLSNAQVITWFQNRRAKQKRDIEE-----LKKDFDSVKV-FSAHKSFLEN 434
            |.|...||..||||:|.:.|...|.     ||.|.|.::. .:.:|..|.|
plant    99 LNLEPLQVKFWFQNKRTQMKAQSERHENQILKSDNDKLRAENNRYKEALSN 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 20/55 (36%)
PDF2NP_567274.1 Homeodomain 63..118 CDD:459649 22/56 (39%)
START_ArGLABRA2_like 248..472 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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