DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and vent

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_571775.1 Gene:vent / 64810 ZFINID:ZDB-GENE-010108-2 Length:170 Species:Danio rerio


Alignment Length:156 Identity:53/156 - (33%)
Similarity:66/156 - (42%) Gaps:31/156 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 SSSNGSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDES 335
            |.|....|.||  .|.....||...|:.:|        |.....|.|.|             |..
Zfish    12 SQSFHDQEKCS--TAAPGAPLTAAAGAGKA--------PASPANSCGYT-------------DVE 53

  Fly   336 QDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITW 400
            .|.|.::...|       |:.||.||..||..|||.|...:||....|.:||..|.||..||.||
Zfish    54 SDDSEVEAGQN-------RRVRTKFTCDQISGLEKSFSKHRYLGATQRRKIAEKLHLSETQVKTW 111

  Fly   401 FQNRRAKQKRDIEELK-KDFDSVKVF 425
            |||||.|.||:::::: .||....||
Zfish   112 FQNRRMKLKREVQDMRAADFLYPAVF 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 29/55 (53%)
ventNP_571775.1 Homeodomain 65..121 CDD:459649 29/55 (53%)

Return to query results.
Submit another query.