DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and Vax1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_072158.1 Gene:Vax1 / 64571 RGDID:621132 Length:336 Species:Rattus norvegicus


Alignment Length:293 Identity:72/293 - (24%)
Similarity:108/293 - (36%) Gaps:101/293 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 RLALDYHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKL 291
            |::.:.|::.:|...|:..|       ||....|      .|.:.|::|::|.|:          
  Rat    20 RVSKNAHKESREIKGAEGSL-------PAAFLKE------PQGAFSASGASEDCN---------- 61

  Fly   292 TTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDK----SHLDIFSNRPQPKK 352
                                ..|||.....|...::..:|...|..:    ..||:  :||    
  Rat    62 --------------------KSKSNSSADPDYCRRILVRDAKGSIREIILPKGLDL--DRP---- 100

  Fly   353 KRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIEELKK 417
             :::||:||..|::.||..|...:|:...:|.|:|..|.||..||..||||||.|||:|   ..|
  Rat   101 -KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD---QGK 161

  Fly   418 DFDSVKVFSAHKSFLENVNDLSILK-----------------------------KKPMHESDMVG 453
            |.:...|.|      |.....|:|:                             :.|...:...|
  Rat   162 DSELRSVVS------ETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAG 220

  Fly   454 LA---AAAAAAGMVVPVPGSV------PMGGAP 477
            .|   ||||||....|.|...      .:||||
  Rat   221 AAAGSAAAAAAAATAPGPAGAASQHPPAVGGAP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 25/55 (45%)
Vax1NP_072158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69 7/48 (15%)
vax upstream domain 72..99 5/28 (18%)
homeobox 100..159 28/66 (42%)
Homeodomain 101..157 CDD:459649 25/55 (45%)
vax downstream domain 178..189 1/10 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..267 6/18 (33%)
vax terminal domain 315..323
Blue background indicates that the domain is not in the aligned region.

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