DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and nkx2.2b

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001007783.2 Gene:nkx2.2b / 493627 ZFINID:ZDB-GENE-050217-3 Length:237 Species:Danio rerio


Alignment Length:138 Identity:46/138 - (33%)
Similarity:63/138 - (45%) Gaps:25/138 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 TTQEGS-EEAQKKKSEEQPTGSGKSNGDTPLDALFQMTT------------------KDFDESQD 337
            |..||| .|..:.:.:|....:.|...|:..|||:..::                  ...|||.|
Zfish    21 TNDEGSVSEDTEDEQDEGLNANQKKQHDSSRDALWLGSSCGHKYPVPSASPEELNPELSADESVD 85

  Fly   338 KSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQ 402
            :      .:.....||||.|..|:..|.||||:||..|:|||..:|:.:|..|.|:..||..|||
Zfish    86 R------ESSEDSGKKRKRRILFSKTQTFELERRFRQQRYLSAPEREHLAKLLHLTPTQVKIWFQ 144

  Fly   403 NRRAKQKR 410
            |.|.|.||
Zfish   145 NHRYKVKR 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 27/55 (49%)
nkx2.2bNP_001007783.2 Homeodomain 96..152 CDD:459649 27/55 (49%)

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