DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and hoxc8a

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001005771.1 Gene:hoxc8a / 449648 ZFINID:ZDB-GENE-990415-114 Length:250 Species:Danio rerio


Alignment Length:123 Identity:39/123 - (31%)
Similarity:57/123 - (46%) Gaps:21/123 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 TQEGSEEAQK---KKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFS-NRPQPKKK 353
            ||:.:..||.   |.|.....|.|:.:                 .||:.|...:|. .||....:
Zfish   102 TQQEATLAQYPDCKSSNSTNPGEGQGH-----------------LSQNSSPSLMFPWMRPHAPGR 149

  Fly   354 RKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRD 411
            |..|..::.:|..||||.||:..||:...|.|::.:|.|:..||..||||||.|.|::
Zfish   150 RNGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKIWFQNRRMKWKKE 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 24/55 (44%)
hoxc8aNP_001005771.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..152 11/56 (20%)
Antp-type hexapeptide. /evidence=ECO:0000255 138..143 1/4 (25%)
Homeodomain 150..206 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..250 0/2 (0%)

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