DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and nkx6.1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001002475.1 Gene:nkx6.1 / 436748 ZFINID:ZDB-GENE-040718-178 Length:312 Species:Danio rerio


Alignment Length:410 Identity:90/410 - (21%)
Similarity:128/410 - (31%) Gaps:189/410 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 HPLKRLRMSSSSSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKS---------FSIADILGH--- 142
            :||.....:||:| |...:|: |..:|.......|.|.:..:.|         ..|.|||..   
Zfish    39 YPLSSTGPASSTS-PTATSPN-PGGIPVSSPGIKTSSGLSALASAQQCAIATPHGINDILSRPSV 101

  Fly   143 --------SEKQREESVSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQI 199
                    |...|..|:||||      ||.                 |...|:|||..:   .:.
Zfish   102 ACSPAGILSGLPRFSSLSPPP------PPG-----------------LYFSPSAAAVAV---ARY 140

  Fly   200 VRPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSS 264
            .:|...|.|.| |:  |.|..:                                           
Zfish   141 PKPLTELPGRT-PI--FWPGVM------------------------------------------- 159

  Fly   265 ERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTT 329
                :|.....:...|||.|...|                                ||       
Zfish   160 ----QSPHWRDARFACSPHQNSVL--------------------------------LD------- 181

  Fly   330 KDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSN 394
            ||                   .|::.:|..|:..|||.|||.|...|||:..:|..:|.|||::.
Zfish   182 KD-------------------GKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTE 227

  Fly   395 AQVITWFQNRRAK-QKRDIEEL-----KKDFDSVKVFSAHKSFLENVND---------------- 437
            :||..||||||.| :||...|:     |:|.::.::    |...||.:|                
Zfish   228 SQVKVWFQNRRTKWRKRHAAEMASAKKKQDSETERL----KGASENEDDDDDYNKPLDPNSDDEK 288

  Fly   438 -LSILKK-KP-----MHESD 450
             ..:||| ||     :|.|:
Zfish   289 ITQLLKKHKPNSALIIHTSE 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 26/56 (46%)
nkx6.1NP_001002475.1 Homeodomain 185..243 CDD:459649 27/57 (47%)

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