DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and CG18599

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_650701.1 Gene:CG18599 / 42191 FlyBaseID:FBgn0038592 Length:475 Species:Drosophila melanogaster


Alignment Length:536 Identity:109/536 - (20%)
Similarity:171/536 - (31%) Gaps:188/536 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PTQHHTHPHSHPHPLQHPRAS------------------TIDLLQQQQLLMQHHAA-AAAAAAAA 72
            |:::|.:|.||...|.:.:||                  .|....|     .|||| |||||||.
  Fly     5 PSKYHANPLSHFLALHNTQASGGGSGGGSSVAGLGGLGGGIHAHGQ-----PHHAALAAAAAAAV 64

  Fly    73 ASGLTRSAVGNLPEDYFHPLKRLRMSSSSSEPRD--------HTPSPPSAVPEPQTNQTTKSAIE 129
            |....:|:.....:...|.|::.:........:.        |.|.||:    |.|.....::..
  Fly    65 AVSAGQSSYQMEHQQQHHQLQQQQQQQQHHHHQQLHTHHQDGHHPHPPT----PTTGNNNNNSSS 125

  Fly   130 GVKSFSIADILGHSEKQREESVSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLL 194
            ...|.|......|.|:....:.:...:|.|:                         .||||...|
  Fly   126 SSNSSSHNSNSNHREQLAAAAATATSHAQLI-------------------------EAAAAHSSL 165

  Fly   195 PSGQIVRPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHMGMNPAIIAS 259
            ..|                :.|..:|:|..:.:         ::.:|....|..|...|  ||..
  Fly   166 DVG----------------KSFTIAAILGLQSQ---------RKDYNNAINLSLHDNNN--IIGD 203

  Fly   260 ED------------------GSSERSQRSSSSNGSTECCS----------------PRQA----- 285
            ::                  ||:..:..||.|..:..|.|                |.||     
  Fly   204 DNNKCYTSNPNNNNNNNNNGGSNSGNNNSSPSVNNFNCDSVAGNGRYLHGGHQHPHPHQAGFAAV 268

  Fly   286 -----------EKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKS 339
                       :.|::|..|..::                           |..|..|...:.||
  Fly   269 AAAVGAAPSALQSLQQLHQQHHAQ---------------------------QQATLSFQREKLKS 306

  Fly   340 HLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNR 404
            .    |::....|.::.||.||..|:..||..|..|:|:...:|..:|.:|.|:.|||..|||||
  Fly   307 D----SHKKSALKNKRVRTIFTPEQLECLEAEFERQQYMVGPERLYLAHTLKLTEAQVKVWFQNR 367

  Fly   405 RAKQKRDIEELKK------------------DFDSVKVFSAHKSFLENVNDLSILKKKPMHESDM 451
            |.|.::...||.:                  :..||...:||....|..|..|..... :.|.|.
  Fly   368 RIKWRKHHLELTQQRLALIRQTQLPGTSLLGNQVSVSANAAHSVSTERTNGCSAASPS-LQEEDN 431

  Fly   452 VGLAAAAAAAGMVVPV 467
            .....:.:.:|.:.|:
  Fly   432 EDSKHSLSLSGALPPL 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 24/55 (44%)
CG18599NP_650701.1 Homeodomain 317..373 CDD:459649 24/55 (44%)

Return to query results.
Submit another query.