DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and ftz

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:175 Identity:51/175 - (29%)
Similarity:75/175 - (42%) Gaps:39/175 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 PAIIASEDGS-----SERSQRSSSSNG---STECCSPRQAEKLEKLTT--QEGSEEAQKKKSEE- 307
            |...||||..     |.:||.....||   :....:|.....||.::|  |...|::....|:| 
  Fly   160 PTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKSSSAVSQEI 224

  Fly   308 ------QPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIF 366
                  .|.|:|                 ||:.|..:..|     ....|..:::|..:|.:|..
  Fly   225 NHRIVTAPNGAG-----------------DFNWSHIEETL-----ASDCKDSKRTRQTYTRYQTL 267

  Fly   367 ELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRD 411
            ||||.|.:.:|::...|.:||.:|.||..|:..||||||.|.|:|
  Fly   268 ELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKD 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 23/55 (42%)
ftzNP_477498.1 FTZ 1..248 CDD:397787 25/109 (23%)
Homeodomain 255..311 CDD:459649 23/55 (42%)
KLF1_2_4_N <321..404 CDD:425360
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.