DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and Hoxc9

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001094377.1 Gene:Hoxc9 / 368178 RGDID:1595784 Length:260 Species:Rattus norvegicus


Alignment Length:311 Identity:72/311 - (23%)
Similarity:102/311 - (32%) Gaps:89/311 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 SAIEGVKSFSIADILGHSEKQREESVSPPPNANLLAPPASRP--------------IAPSGGLLQ 176
            ||...:.::.:..::.|..:....|..|...|:   |.|:||              .||...:..
  Rat     2 SATGPISNYYVDSLISHDNEDLLASRFPATGAH---PAAARPSGLVPDCSDFPSCSFAPKPAVFS 63

  Fly   177 PRTEPLDVHPAAAAAMLLPSGQIVRPWDHLLGPTMPVR------------PFIPSALLHYEQRLA 229
            ....|:   |:.::.:..|.|    |..||...|..:|            |..|:...||.    
  Rat    64 TSWAPV---PSQSSVVYHPYG----PQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYA---- 117

  Fly   230 LDYHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQ 294
                      ....|...|.....|.     ||.|.......|. |.....:|      :.|.:.
  Rat   118 ----------LKPDAYPGRRADCGPG-----DGRSYPDYMYGSP-GELRDRAP------QTLPSP 160

  Fly   295 EGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTA 359
            |....|..|..||:                     .|.|.|..      .:|....:..||.|..
  Rat   161 EADALAGSKHKEEK---------------------ADLDPSNP------VANWIHARSTRKKRCP 198

  Fly   360 FTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKR 410
            :|.:|..||||.||:..||:...|.|:|..|.|:..||..||||||.|.|:
  Rat   199 YTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 27/55 (49%)
Hoxc9NP_001094377.1 Hox9_act 1..179 CDD:461369 41/233 (18%)
Homeodomain 193..241 CDD:459649 21/47 (45%)

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