DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and PDX1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_000200.1 Gene:PDX1 / 3651 HGNCID:6107 Length:283 Species:Homo sapiens


Alignment Length:130 Identity:43/130 - (33%)
Similarity:63/130 - (48%) Gaps:22/130 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 QPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIE 413
            :|::.:::|||:|..|:.||||.||:.||:|...|.|:|..|.|:...:..||||||.|.|:  |
Human   142 EPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK--E 204

  Fly   414 ELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESDMVGLAAAAAAAGMVVPVPGSVPMGGAPP 478
            |.||......|.....:             :|  |.|     .|..:...::.:|...|.|||.|
Human   205 EDKKRGGGTAVGGGGVA-------------EP--EQD-----CAVTSGEELLALPPPPPPGGAVP 249

  Fly   479  478
            Human   250  249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 26/55 (47%)
PDX1NP_000200.1 Transactivation domain. /evidence=ECO:0000250 13..73
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..71
Antp-type hexapeptide 118..123
Homeodomain 147..203 CDD:459649 26/55 (47%)
Nuclear localization signal. /evidence=ECO:0000250 197..203 3/5 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..283 16/71 (23%)
Blue background indicates that the domain is not in the aligned region.

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