DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and Cdx1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001406562.1 Gene:Cdx1 / 364883 RGDID:621233 Length:273 Species:Rattus norvegicus


Alignment Length:399 Identity:81/399 - (20%)
Similarity:116/399 - (29%) Gaps:180/399 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 RMSSSSSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREESVSPPPN--AN 158
            |.||....|..:.|..|:..| ||                ..|..|::..  |.:.:|||.  |.
  Rat    19 RPSSLGLGPPTYAPPGPAPAP-PQ----------------YPDFAGYTHV--EPAPAPPPTWAAP 64

  Fly   159 LLAP--------------PASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWDHLLGP 209
            ..||              ||:.| ||......|...|:...|.....:|..|         |.||
  Rat    65 FPAPKDDWAAAYGPGPAVPAASP-APLAFGPPPDFSPVPAPPGPGPGILAQS---------LGGP 119

  Fly   210 TMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSN 274
            ..|..|.:       ::|...::.|:                    .:|:..|.           
  Rat   120 GAPSSPGV-------QRRTPYEWMRR--------------------NVAAAGGG----------- 146

  Fly   275 GSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKS 339
                                                ||||:.            |||        
  Rat   147 ------------------------------------GSGKTR------------TKD-------- 155

  Fly   340 HLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNR 404
                           |.|..:|:||..||||.|.|.:|::...:.|:||:|||:..||..|||||
  Rat   156 ---------------KYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNR 205

  Fly   405 RAKQKRDIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESDMVGLAAAAAAAGMVVPVPG 469
            |||:::                        ||.....:::...:..|..........|  .|.|.
  Rat   206 RAKERK------------------------VNKKKQQQQQQQQQQPMPPTQLPLPLDG--TPTPS 244

  Fly   470 SVPMGGAPP 478
            ..|:|...|
  Rat   245 GPPLGSLCP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 28/55 (51%)
Cdx1NP_001406562.1 Caudal_act 13..140 CDD:461413 35/176 (20%)
Homeodomain 156..211 CDD:459649 28/54 (52%)

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