DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and cad

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster


Alignment Length:442 Identity:104/442 - (23%)
Similarity:152/442 - (34%) Gaps:121/442 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PPTMRPASPAESEISVGGAP-SPLPTQHHTHPH-------SHPHPLQHPRASTIDLLQQQQLLMQ 60
            |.|.:.::...:..|..|.| :..|..|||.|:       ...|...|..|:      .|.....
  Fly    10 PYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVDSSHAAHHAAAA------HQMYYNS 68

  Fly    61 HHAAAAAAAAAA------ASGLTRSAVGNLPEDYFHPLKRLR-------MSSSSSEPRDHTPSPP 112
            ||...:||||:|      ||....:.|.|:|.. .|.|.:..       .|||:|.....:...|
  Fly    69 HHMFHSAAAASAGEWHSPASSTADNFVQNVPTS-AHQLMQQHHHHHAHASSSSASSGSSSSGGAP 132

  Fly   113 SAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREESVSPPPNANLLAPPASRPIAPSGGLLQP 177
            .|   ||.|:|..|.  ||........:|.:......|..|....::.....|.||..||..:. 
  Fly   133 GA---PQLNETNSSI--GVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEIS- 191

  Fly   178 RTEPLDVHPAAAAAMLLPSGQIVRPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNA 242
                   .|.|                    ||....|                 |..|..|.:|
  Fly   192 -------SPGA--------------------PTSASSP-----------------HHHLAHHLSA 212

  Fly   243 QAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEE 307
            .|....:...|....::.:.::  :..|.|:|..|....|...:.::|          ....::.
  Fly   213 VANNNNNNNNNNNSPSTHNNNN--NNNSVSNNNRTSPSKPPYFDWMKK----------PAYPAQP 265

  Fly   308 QPTGSGKSN----GDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFEL 368
            ||..|...|    .|. |||..:..|||                       |.|..:|:.|..||
  Fly   266 QPDLSSSPNLEDLSDL-LDASGKTRTKD-----------------------KYRVVYTDFQRLEL 306

  Fly   369 EKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIEELKKDFD 420
            ||.:...:|::...:.|:|.:|.||..||..||||||||:::   :.||..|
  Fly   307 EKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERK---QNKKGSD 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 24/55 (44%)
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 24/54 (44%)

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