DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and HOXD8

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_062458.1 Gene:HOXD8 / 3234 HGNCID:5139 Length:290 Species:Homo sapiens


Alignment Length:378 Identity:84/378 - (22%)
Similarity:112/378 - (29%) Gaps:155/378 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LMQHHAAAAAAAAAAASGLTRSAVGNLPEDY---FHP---------LKRLRMSSSSSEPRDHTPS 110
            |...:.|||||||||...:.       |..|   |.|         ...|::..:|:....|.|.
Human     9 LYSKYKAAAAAAAAAGEAIN-------PTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPP 66

  Fly   111 PPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREESVSPPPNANLLAPPASRP---IAPSG 172
            ...|.|.|                                 ||||:.........|.   ..|.|
Human    67 QAHAHPHP---------------------------------SPPPSGTGCGGREGRGQEYFHPGG 98

  Fly   173 GLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQ 237
            |           .||||.....|      |..|  .|..|..|.......|.|......|.    
Human    99 G-----------SPAAAYQAAPP------PPPH--PPPPPPPPPCGGIACHGEPAKFYGYD---- 140

  Fly   238 EHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEAQK 302
               |.|.|.:                                           .|||:.:|..|.
Human   141 ---NLQRQPI-------------------------------------------FTTQQEAELVQY 159

  Fly   303 KKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSN--------RPQPKK-KRKSRT 358
            ...:       .|:|:.               .:|..||:..|:        |||... :|:.|.
Human   160 PDCK-------SSSGNI---------------GEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQ 202

  Fly   359 AFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRD 411
            .::..|..||||.||:..||:...|.|::.:|.|:..||..||||||.|.|::
Human   203 TYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKE 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 24/55 (44%)
HOXD8NP_062458.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..127 23/118 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..200 10/60 (17%)
Homeodomain 198..254 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..290 0/1 (0%)

Return to query results.
Submit another query.