DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and hoxc3a

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001128157.3 Gene:hoxc3a / 30421 ZFINID:ZDB-GENE-980526-532 Length:263 Species:Danio rerio


Alignment Length:167 Identity:43/167 - (25%)
Similarity:66/167 - (39%) Gaps:48/167 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 SEDGS-----SERSQRSSSSNGSTECCSP------RQAEKLEKLTTQEGSEEAQKKKSEEQPTGS 312
            |:||:     :....|..:...||.|.|.      |:..:|...::....|....|         
Zfish    90 SDDGNHSLDPANALGRKKACELSTSCLSTMKYPWMRETHELMHFSSINAMESGDSK--------- 145

  Fly   313 GKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKY 377
             .|||:..:                           :....:::|.|||:.|:.||||.|.:..|
Zfish   146 -YSNGEAVV---------------------------RNSSSKRARVAFTSSQLLELEKEFHFSAY 182

  Fly   378 LSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIEE 414
            |....|.|:|..|.|::.|:..||||||.|.|:|.:|
Zfish   183 LCRNRRLEMAELLKLTDRQIKIWFQNRRMKYKKDHKE 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 25/55 (45%)
hoxc3aNP_001128157.3 None

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