DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and hoxa11b

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_571222.1 Gene:hoxa11b / 30382 ZFINID:ZDB-GENE-990415-4 Length:283 Species:Danio rerio


Alignment Length:147 Identity:40/147 - (27%)
Similarity:63/147 - (42%) Gaps:43/147 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 SSNGSTECCSPRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQ 336
            :.:||..|....:.|:.|:.::.|.|....:.|.      ||.|||                   
Zfish   169 AESGSDSCRGTDETERCEETSSPEPSSGNNEDKF------SGSSNG------------------- 208

  Fly   337 DKSHLDIFSNRPQPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWF 401
                          :|.||.|..:|.:||.|||:.|.:..|::...|.:::..|.|::.||..||
Zfish   209 --------------QKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWF 259

  Fly   402 QNRRAKQKRDIEELKKD 418
            ||||.|:|:    |.:|
Zfish   260 QNRRMKEKK----LNRD 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 23/55 (42%)
hoxa11bNP_571222.1 DUF3528 26..151 CDD:432284
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..215 16/84 (19%)
Homeodomain 212..268 CDD:459649 23/55 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.