DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and Gbx1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001258382.1 Gene:Gbx1 / 246149 RGDID:621864 Length:425 Species:Rattus norvegicus


Alignment Length:469 Identity:111/469 - (23%)
Similarity:157/469 - (33%) Gaps:164/469 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 SAVGNLPEDYFHPLKRLRMSSSSSEPRDHTPSP-----PSA-----VPEPQTNQTTKSAIEGV-- 131
            |..|:.|.....||......|::.||....|:|     |.|     |..|...:...||::..  
  Rat     2 SPEGDTPSPPARPLPPYERGSAAPEPHCAEPAPRRYLGPRARSEPCVSAPGARRGPGSAMQRAAG 66

  Fly   132 ---------------KSFSIADILGHSEKQREESVSPPPNANLLAPPASRPIAPSGGLLQPRTEP 181
                           .:|||..::|            ||      ||.|..:..:|..:.....|
  Rat    67 GGAPGGSGGSGGGPGTAFSIDSLIG------------PP------PPRSGHLLYTGYPMFMPYRP 113

  Fly   182 LDVHPAAAAAMLLPSGQIVRPWDHLLGPTMPVRPF---------------IPSALLHYEQRLALD 231
            | |.|.|.|...||:|         |.|..|:..|               :||.:   ....||.
  Rat   114 L-VLPQALAPAPLPAG---------LPPLAPLASFAGRLSNTFCAGLGQAVPSMV---ALTTALP 165

  Fly   232 YHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLT---- 292
            ...:..:.:....:|........|...|.......::|:..:..:.|....|     ||:|    
  Rat   166 SFAEPPDAYYGPPELAAAAAAAAASTVSRSNPEPPARRTDGALDADELLPAR-----EKVTEPPP 225

  Fly   293 ----------------TQEG----SEEAQKKKSEEQPTGSGK----SNGDTPLDALFQMTTKDFD 333
                            ..||    |:|.:.:....:|.||..    |.||               
  Rat   226 PPPPPPPHFSETFPSLPAEGKVYSSDEEKLEPPAGEPAGSEPEEEGSGGD--------------- 275

  Fly   334 ESQDKSHLDIFSN------RPQPK------------------------KKRKSRTAFTNHQIFEL 368
             |:| |.||..:.      .|:||                        |.|:.|||||:.|:.||
  Rat   276 -SED-SFLDSSAGGPGALLGPKPKLKGSLGTGAEEGTPVATGVTTPGGKSRRRRTAFTSEQLLEL 338

  Fly   369 EKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIEELKKDFDSVKVFSAHKSFLE 433
            ||.|..:||||..:|.:||.:|.||..||..||||||||.||           :|..:......|
  Rat   339 EKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR-----------IKAGNVSSRSGE 392

  Fly   434 NVNDLSILKKKPMH 447
            .|.:..|:...|:|
  Rat   393 PVRNPKIVVPIPVH 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 32/55 (58%)
Gbx1NP_001258382.1 Homeodomain 324..380 CDD:459649 32/55 (58%)

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