DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and Nkx2-3

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_032725.1 Gene:Nkx2-3 / 18089 MGIID:97348 Length:362 Species:Mus musculus


Alignment Length:260 Identity:69/260 - (26%)
Similarity:106/260 - (40%) Gaps:91/260 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 MLLPSGQIVRPWDHLLGPTMPV--RPFIPSALLHYEQRLALDYHRQLQEHFNA---QAQLLRHMG 251
            |:|||               ||  .||....:|:.||          |.||:.   ||:|.:|..
Mouse     1 MMLPS---------------PVTSTPFSVKDILNLEQ----------QRHFHGAHLQAELEQHFH 40

  Fly   252 MNPAIIASEDGS--SERSQRSSSSNGS------------------------------TECCSPRQ 284
            ..|.::|:.:|:  |:..:......|.                              ..|..|::
Mouse    41 SAPCMLATAEGTQFSDAGEEDEEEEGEKLSYLNSLAAAEGHGDSGLCPQSYVHTVLRDACSGPKE 105

  Fly   285 AEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQ 349
            .|  |::.::...:..|.|||.| ..|..|::.|                          ..||:
Mouse   106 QE--EEVVSERSQKSCQLKKSLE-AAGDCKTSED--------------------------GERPK 141

  Fly   350 PKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRDIEE 414
            |:.:||.|..|:..|:||||:||..|:|||..:|:.:|:||.|::.||..||||||.|.||..::
Mouse   142 PRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQD 206

  Fly   415  414
            Mouse   207  206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 29/55 (53%)
Nkx2-3NP_032725.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 126..149 9/49 (18%)
Homeodomain 146..202 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..222 0/4 (0%)

Return to query results.
Submit another query.