DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbe and Msx3

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_034966.1 Gene:Msx3 / 17703 MGIID:106587 Length:204 Species:Mus musculus


Alignment Length:195 Identity:60/195 - (30%)
Similarity:79/195 - (40%) Gaps:43/195 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 PRQAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSN 346
            |...|.|.:.....|||..:  ...|:|.|:.|. |..|.........:              :.
Mouse    27 PFSVESLLEAERVPGSESGE--LGVERPLGASKP-GAWPPPVAHSCPPR--------------AP 74

  Fly   347 RPQP------KKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRR 405
            .|.|      |..||.||.||..|:..||::|..::|||.|:|.|.::||.|:..||..||||||
Mouse    75 SPPPCTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 139

  Fly   406 AKQKR----DIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESDMVGLAAAAAAAGMVVP 466
            ||.||    ::|:||         .|.|..|.....|.......:|.|       ||...|..||
Mouse   140 AKAKRLQEAELEKLK---------LAAKPLLPAAFALPFPLGTQLHSS-------AATFGGNAVP 188

  Fly   467  466
            Mouse   189  188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 29/55 (53%)
Msx3NP_034966.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..89 12/66 (18%)
Homeodomain 88..144 CDD:459649 29/55 (53%)

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