DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbe and Msx1

DIOPT Version :10

Sequence 1:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_034965.2 Gene:Msx1 / 17701 MGIID:97168 Length:303 Species:Mus musculus


Alignment Length:342 Identity:90/342 - (26%)
Similarity:129/342 - (37%) Gaps:113/342 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 LAPPASRPIAPSG------GLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWDHLLGPTMPVRPFIP 218
            :||.|:....|.|      ...:|....:...|.||||.....|.          .....:|.:|
Mouse     1 MAPAAAMTSLPLGVKVEDSAFAKPAGGGVGQAPGAAAATATAMGT----------DEEGAKPKVP 55

  Fly   219 SALLHYEQRLALDYHRQLQEHFNAQAQLLRHMGMNPAIIASEDGSSERSQRSSSSNGSTECCSPR 283
            ::||.:.....:..||:              .|...:::.:.:|       :.::.||       
Mouse    56 ASLLPFSVEALMADHRK--------------PGAKESVLVASEG-------AQAAGGS------- 92

  Fly   284 QAEKLEKLTTQEGSEEAQKKKSEEQPTGSGKSNG--DTPLDALFQMTTKDFDESQDKSHLD---- 342
                ::.|.|:.||..|....|..:|.|.....|  ..|.|||.:.      ||.:|  ||    
Mouse    93 ----VQHLGTRPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKA------ESPEK--LDRTPW 145

  Fly   343 ----IFSNRP------------QPKKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLG 391
                .||..|            :.|..||.||.||..|:..||::|..::|||.|:|.|.::||.
Mouse   146 MQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLS 210

  Fly   392 LSNAQVITWFQNRRAKQKR----DIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESDMV 452
            |:..||..||||||||.||    ::|:||                        :..|||......
Mouse   211 LTETQVKIWFQNRRAKAKRLQEAELEKLK------------------------MAAKPMLPPAAF 251

  Fly   453 GL-------AAAAAAAG 462
            ||       ||.|||||
Mouse   252 GLSFPLGGPAAVAAAAG 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 29/55 (53%)
Msx1NP_034965.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..53 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..112 8/32 (25%)
PTZ00449 <99..>248 CDD:185628 57/180 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 135..163 8/29 (28%)
Homeodomain 173..229 CDD:459649 29/55 (53%)

Return to query results.
Submit another query.