DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and HDG2

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_172015.1 Gene:HDG2 / 839256 AraportID:AT1G05230 Length:721 Species:Arabidopsis thaliana


Alignment Length:241 Identity:53/241 - (21%)
Similarity:82/241 - (34%) Gaps:86/241 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 QEDRMEVPK-KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSR 255
            ::|..:.|. ||..|..:|.|                   ..:|||...|        ||||..|
plant    33 RDDEFDSPNTKSGSENQEGGS-------------------GNDQDPLHPN--------KKKRYHR 70

  Fly   256 TAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCE 320
              .|..||.|:|..|....:.....|.:::..|.|...||..||||:|.::|             
plant    71 --HTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMK------------- 120

  Fly   321 KIPDQSADPNRSHHNHPHYHQQHQHYAHMQSIGSDRDMDKDRCREK----------------EKD 369
                          ||   |::|:: :|:::.......|..|.||.                |..
plant   121 --------------NH---HERHEN-SHLRAENEKLRNDNLRYREALANASCPNCGGPTAIGEMS 167

  Fly   370 KDKEELRML---------KLMTLMRYSDGKLLYQQPPASYLPIPHR 406
            .|:.:||:.         ::..:.....||.:...|..|..|:|.|
plant   168 FDEHQLRLENARLREEIDRISAIAAKYVGKPVSNYPLMSPPPLPPR 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 28/125 (22%)
Homeodomain 252..308 CDD:459649 18/55 (33%)
HDG2NP_172015.1 Homeodomain 65..121 CDD:459649 21/84 (25%)
MreC <130..>202 CDD:480808 11/71 (15%)
START_ArGLABRA2_like 246..464 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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