DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and HDG8

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_186976.2 Gene:HDG8 / 821305 AraportID:AT3G03260 Length:699 Species:Arabidopsis thaliana


Alignment Length:193 Identity:46/193 - (23%)
Similarity:72/193 - (37%) Gaps:52/193 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 SNPKKKRKSRTA--FTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAK--- 305
            |...|:...||.  .|.|||..||..|....:.....|:::...|.|...|:..||||:|.:   
plant    16 SGDAKQNGKRTCHRHTPQQIQRLEAYFKECPHPDERQRNQLCRELKLEPDQIKFWFQNKRTQSKT 80

  Fly   306 ---------LKRDMEELKKD----------VQCEKIPDQSADP-NRSHHNHPHYHQQHQHYAHMQ 350
                     |:.:.|.|:.|          |.|   |.....| .|....|           ::|
plant    81 QEDRSTNVLLRGENETLQSDNEAMLDALKSVLC---PACGGPPFGREERGH-----------NLQ 131

  Fly   351 SIGSDRDMDKDRCREK-----EKDKDKE---ELRMLKLMTLMRYS---DGKLLYQQPPASYLP 402
            .:..:....||. |::     ::.|..|   |..:..:.:|.|.|   :|..:| :|.:||.|
plant   132 KLRFENARLKDH-RDRISNFVDQHKPNEPTVEDSLAYVPSLDRISYGINGGNMY-EPSSSYGP 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 28/110 (25%)
Homeodomain 252..308 CDD:459649 19/69 (28%)
HDG8NP_186976.2 Homeodomain 24..79 CDD:459649 18/54 (33%)
START_ArGLABRA2_like 208..434 CDD:176884
SRPBCC 486..664 CDD:472699
Blue background indicates that the domain is not in the aligned region.

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