DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbl and HB4

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_182018.1 Gene:HB4 / 819100 AraportID:AT2G44910 Length:318 Species:Arabidopsis thaliana


Alignment Length:301 Identity:66/301 - (21%)
Similarity:98/301 - (32%) Gaps:94/301 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 PALLHSYEQRLAWDY-------QRQLQEHFQAQAQLLRQMTLNPA--IIASEDGSSERSQRSSSS 172
            |..:|:    ::|.:       :|...|........||...:|.|  .:|..|...|.:..|   
plant    52 PQKIHN----ISWTHLFQSSGIKRTTAERNSDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVS--- 109

  Fly   173 NGSTECCSPTQAEKVEKRSQEDRMEVPKKSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPA 237
                   ||..|......::.| :.|.:...|.:.:.||.|.|.         .:...|:|..  
plant   110 -------SPNSAVSSLSGNKRD-LAVARGGDENEAERASCSRGG---------GSGGSDDEDG-- 155

  Fly   238 TLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNR 302
                    .|....|| :...:..|...||:.|.....|:|..:..:|..|.|...||..|||||
plant   156 --------GNGDGSRK-KLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNR 211

  Fly   303 RAKLKRDMEELKK-DVQCEKIP---DQSADPNRSHHNHPHYHQQHQHYAHMQSIGSDRDMDKDRC 363
            ||:.|     ||: :|.||.:.   |...:.||                                
plant   212 RARTK-----LKQTEVDCEYLKRCCDNLTEENR-------------------------------- 239

  Fly   364 REKEKDKDKEELRMLKLMTLMRYSDGKLLYQQPPASYLPIP 404
               ...|:..|||.|||      |....::..||.:....|
plant   240 ---RLQKEVSELRALKL------SPHLYMHMTPPTTLTMCP 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 35/129 (27%)
Homeodomain 252..308 CDD:459649 20/55 (36%)
HB4NP_182018.1 HD-ZIP_N 8..124 CDD:461370 16/85 (19%)
Homeodomain 162..216 CDD:459649 20/54 (37%)
HALZ 218..261 CDD:128634 15/83 (18%)

Return to query results.
Submit another query.