DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and nkx2.1

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571851.1 Gene:nkx2.1 / 81883 ZFINID:ZDB-GENE-010404-1 Length:346 Species:Danio rerio


Alignment Length:354 Identity:83/354 - (23%)
Similarity:132/354 - (37%) Gaps:107/354 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SPVRVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIPLVPNCPPPAALH 112
            ||.....||::|||      ..:|:..:::::.....|  ||||                     
Zfish     4 SPKHTTPFSVSDIL------SPLEESYKKVSMEGNNLG--APLA--------------------- 39

  Fly   113 TFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMTLNPAIIASEDGSSERSQRSSSS--NGS 175
                     ||.|...  .|..:|:|...     ...|:..|...:..|.|:.|..:...  ||:
Zfish    40 ---------SYRQPQV--TQAAMQQHHMG-----HNGTVPAAYHMTAAGVSQLSHTAMGGYCNGN 88

  Fly   176 TECCSPTQAEKVEKRSQEDRMEVPKKSPEEQPKGASK---SSGDTPLDALFQLST-KNFDEEQDP 236
            ....|...|.:...|...........:|:.:....|:   ||....:.::..||: .:..:...|
Zfish    89 LGNMSDLPAYQDGMRGSTTATSWYGTNPDPRFSTISRFMGSSSGMNMGSMSTLSSLADVGKGMGP 153

  Fly   237 ATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQN 301
            .|       |.|::||  |..|:..|::|||:||..|||||..:|:.:|..:.|:..||..||||
Zfish   154 LT-------STPRRKR--RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 209

  Fly   302 RRAKLKR------DMEELKKD-VQCEK---------IP----------DQSADPNRSHHNHPHYH 340
            .|.|:||      ..:::::| ..|::         :|          ..|..||....|  |:|
Zfish   210 HRYKMKRQAKDKVSQQQMQQDNGSCQQQQQSPRRVAVPVLVKDGKPCQGSSHTPNTGVQN--HHH 272

  Fly   341 Q---------------QHQHYAHMQSIGS 354
            |               |||    .|.:||
Zfish   273 QGGNVMFMTNTSLSMSQHQ----SQQVGS 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 43/155 (28%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
nkx2.1NP_571851.1 Homeodomain 160..216 CDD:459649 26/57 (46%)

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