DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Vax2

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_072159.2 Gene:Vax2 / 64572 RGDID:621133 Length:292 Species:Rattus norvegicus


Alignment Length:187 Identity:56/187 - (29%)
Similarity:79/187 - (42%) Gaps:53/187 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DGSSERS---QRSSSSNGSTECCSPTQAEKVEKRSQED-RMEVPKKSPEE-------QPKGASKS 213
            ||.:||.   :|.....|.:.|       :.|.|..|| |.:....||.|       .|.|:.:|
  Rat     3 DGGAERDRGPKRREEPGGRSGC-------RGEHRGAEDLRADTGSTSPREIAGTSASSPAGSRES 60

  Fly   214 SGDTPLDALFQLSTKNFDEEQD-------------------PATLNIFATRSNPKKKRKSRTAFT 259
            .||:  |....|.      |.|                   |..|::    ..||   ::||:||
  Rat    61 GGDS--DGQQALG------ETDHCRRILVRDAKGTIREIVLPKGLDL----DRPK---RTRTSFT 110

  Fly   260 NQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDM-EELKK 315
            .:|::.||..|...:|:...:|.|:|..|.||..||..||||||.|.|:|. .:|:|
  Rat   111 AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEK 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 41/130 (32%)
Homeodomain 252..308 CDD:459649 24/55 (44%)
Vax2NP_072159.2 vax upstream domain 74..101 3/30 (10%)
homeobox 102..161 27/61 (44%)
Homeodomain 103..159 CDD:459649 25/58 (43%)
vax downstream domain 182..193
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..241
vax terminal domain 266..274
Blue background indicates that the domain is not in the aligned region.

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