DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and nkx6.2

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001129256.1 Gene:nkx6.2 / 565782 ZFINID:ZDB-GENE-070626-1 Length:278 Species:Danio rerio


Alignment Length:142 Identity:48/142 - (33%)
Similarity:68/142 - (47%) Gaps:16/142 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 PKGASKSSGDTPLDALFQLSTKNFDEEQDP-----ATLNIFATRSNPKKKRKSRTAFTNQQIFEL 266
            ||..::..|..|   :|..........:||     |..|:...:..  ||:.||..|:.||||.|
Zfish   107 PKPLTELPGRAP---IFWPGMMQGSPWRDPRVPCAAQANMMLDKDG--KKKHSRPTFSGQQIFAL 166

  Fly   267 EKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAK-LKRDMEEL-----KKDVQCEKIPDQ 325
            ||.|...|||:..:|..:|..||::.:||..||||||.| .||...|:     |.|.:.||:.:.
Zfish   167 EKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMATAKKKHDSETEKMKES 231

  Fly   326 SADPNRSHHNHP 337
            |.:.....:|.|
Zfish   232 SDNDEDDEYNKP 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 46/135 (34%)
Homeodomain 252..308 CDD:459649 27/56 (48%)
nkx6.2NP_001129256.1 Homeodomain 150..208 CDD:459649 29/57 (51%)

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