DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and lbx1a

DIOPT Version :9

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001020703.1 Gene:lbx1a / 564103 ZFINID:ZDB-GENE-040724-40 Length:269 Species:Danio rerio


Alignment Length:276 Identity:103/276 - (37%)
Similarity:132/276 - (47%) Gaps:97/276 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 TQAEKVEKRSQEDRMEVPKKSPEEQ---PKGASK-----------------------------SS 214
            |..|..:..|.|||    ::||.:.   |..::|                             ||
Zfish     2 TSKEDAKGASVEDR----RRSPLDHLPPPANSNKPLTPFSIEDILNKPSVKRSYTICGTAHLLSS 62

  Fly   215 GD------------------TPLDALFQLSTKNFD----------EEQDPATLNIFATRSNPKKK 251
            |:                  :||.||.:|::|.|.          |.:|..||  |..|:.|||:
Zfish    63 GEKHPSTGHPLSNRALLTQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTL--FGQRNTPKKR 125

  Fly   252 RKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKD 316
            |||||||||.||:||||||||||||||||||:||..|||:||||||||||||||||||:||:|.|
Zfish   126 RKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKAD 190

  Fly   317 VQCEK----IP-------------------DQSA-DPNRSHHNHPHYHQQHQHYAHMQSIGSDRD 357
            |:..|    :|                   |.|| .|:||:|.|...::.|..       .|...
Zfish   191 VESAKAVGNVPFEKMAKLADLEKRVNGTLGDSSAVSPSRSNHEHEGTNKLHMS-------PSSPY 248

  Fly   358 MDKDRCREKEKDKDKE 373
            .|....:|..:|:|:|
Zfish   249 TDHTTSKECSEDEDEE 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 84/209 (40%)
Homeobox 254..307 CDD:278475 46/52 (88%)
lbx1aNP_001020703.1 Homeobox 128..181 CDD:278475 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574718
Domainoid 1 1.000 107 1.000 Domainoid score I6439
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1472248at2759
OrthoFinder 1 1.000 - - FOG0002643
OrthoInspector 1 1.000 - - mtm6413
orthoMCL 1 0.900 - - OOG6_107037
Panther 1 1.100 - - O PTHR24336
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5376
SonicParanoid 1 1.000 - - X3367
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.740

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