DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Emx1

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001414509.1 Gene:Emx1 / 500235 RGDID:1564002 Length:290 Species:Rattus norvegicus


Alignment Length:110 Identity:39/110 - (35%)
Similarity:54/110 - (49%) Gaps:13/110 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 KKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEEL 313
            :|.::.||||:..|:..||:.|....|:..|:|.::||.|.||..||..||||||.|.||...| 
  Rat   190 RKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLE- 253

  Fly   314 KKDVQCEKIPDQSADPNRSHHNHPHYHQQHQHYAHMQSIGSDRDM 358
                  |:.|:.......|||.:      ....|..|:.|.|.|:
  Rat   254 ------EEGPESEQKKKGSHHIN------RWRIATKQANGEDIDV 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 31/82 (38%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
Emx1NP_001414509.1 None

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