DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and nkx6.1

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001002475.1 Gene:nkx6.1 / 436748 ZFINID:ZDB-GENE-040718-178 Length:312 Species:Danio rerio


Alignment Length:355 Identity:82/355 - (23%)
Similarity:122/355 - (34%) Gaps:113/355 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 NCPPPAALH--TFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMTLNPAIIASEDGSSERS 166
            |.||.||||  |.:...|..:|          .|.....|.:......:.||..|.......:.|
Zfish    18 NTPPLAALHSMTEMKTPLYPAY----------PLSSTGPASSTSPTATSPNPGGIPVSSPGIKTS 72

  Fly   167 QRSSSSNGSTEC------------------CSPTQAEKVEKRSQEDRMEVPKK-----SPE---- 204
            ...|:...:.:|                  |||  |..:....:...:..|..     ||.    
Zfish    73 SGLSALASAQQCAIATPHGINDILSRPSVACSP--AGILSGLPRFSSLSPPPPPGLYFSPSAAAV 135

  Fly   205 ---EQPKGASKSSGDTPL------------DALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKS 254
               ..||..::..|.||:            ||.|..|     ..|:...|:      ...|::.:
Zfish   136 AVARYPKPLTELPGRTPIFWPGVMQSPHWRDARFACS-----PHQNSVLLD------KDGKRKHT 189

  Fly   255 RTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAK-LKRDMEEL----- 313
            |..|:.||||.|||.|...|||:..:|..:|..||::.:||..||||||.| .||...|:     
Zfish   190 RPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKK 254

  Fly   314 KKDVQCEKIPDQSADPNRSHHNHPHYHQQHQHYAHMQSIGSDRDMDKDRCREKEKDKDKEELRML 378
            |:|.:.|::...|                           .:.|.|.|..:..:.:.|.|::.  
Zfish   255 KQDSETERLKGAS---------------------------ENEDDDDDYNKPLDPNSDDEKIT-- 290

  Fly   379 KLMTLMRYSDGKLLYQQPPASYLPIPHRQN 408
                       :||.:..|.|.|.|...:|
Zfish   291 -----------QLLKKHKPNSALIIHTSEN 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 45/143 (31%)
Homeodomain 252..308 CDD:459649 26/56 (46%)
nkx6.1NP_001002475.1 Homeodomain 185..243 CDD:459649 27/57 (47%)

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