DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbl and tin

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster


Alignment Length:413 Identity:108/413 - (26%)
Similarity:145/413 - (35%) Gaps:116/413 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 EHDRQKSSP--------VRVKSFSIADILGRGHEEDRVEKKPERI---AIPNAL----------- 83
            :|..|..||        :....||:.|||...::.:..|.....|   |..:||           
  Fly    16 DHYTQSPSPGSLTNADALNTTPFSVKDILNMVNQTEAYEGSYGHIDGAATASALFAAGEYQNPHQ 80

  Fly    84 ---------PGVPAP-LALINERLQ---------IPLVPNCPPPAALH----TFLSPALL----- 120
                     ..:|.| ..|.::.|.         .||:|  |||..|:    .:..||.:     
  Fly    81 YLNHQQHQQSELPIPQQQLHHQHLDDGATTSSSLSPLLP--PPPHQLYGGYQDYGMPAHMFQHHH 143

  Fly   121 ---HSYEQRLAWDYQRQLQEHFQAQAQLLRQMTLNPAII-ASEDGSSERSQRSSSS--------- 172
               |...|..|..|.....: |.|.|......|  ||.. .:..||.|....::.|         
  Fly   144 GHPHQSFQHSASAYNMSASQ-FYAGASATAYQT--PATYNYNYAGSGEVYGGATPSAVGIKSEYI 205

  Fly   173 -------------NGSTECCS---PTQAEKVEKRSQEDRMEVPKKSPE-----EQPKGASKSSGD 216
                         |.|.|..|   |||...|...||. .||....|..     ...:||.|....
  Fly   206 PTPYVTPSPTLDLNSSAEVDSLQAPTQKLCVNPLSQR-LMETASNSSSLRSIYGSDEGAKKKDNS 269

  Fly   217 TPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADR 281
            ....:..:|...:.....:|.: |..:|:  |:.|||.|..|:..|:.|||.||..:|||:.|:|
  Fly   270 QVTSSRSELRKNSISGNSNPGS-NSGSTK--PRMKRKPRVLFSQAQVLELECRFRLKKYLTGAER 331

  Fly   282 DEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCEKI-------------PDQSADPNRSH 333
            :.||..|.||..||..||||||.|.||.      |:.||.|             |.....|..:|
  Fly   332 EIIAQKLNLSATQVKIWFQNRRYKSKRG------DIDCEGIAKHLKLKSEPLDSPTSLPPPIPNH 390

  Fly   334 HNHP----HYHQQHQHYAHMQSI 352
            ...|    ...||.||:|..|.:
  Fly   391 VMWPPTMQQSQQQQQHHAQQQQM 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 46/138 (33%)
Homeodomain 252..308 CDD:459649 29/55 (53%)
tinNP_524433.1 Homeodomain 302..358 CDD:459649 29/55 (53%)

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