DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Nanog

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001094251.1 Gene:Nanog / 414065 RGDID:1303178 Length:312 Species:Rattus norvegicus


Alignment Length:104 Identity:40/104 - (38%)
Similarity:52/104 - (50%) Gaps:13/104 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 SSGDTPL--------DALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKR 269
            ||||.||        :...:||....||..:....|...|     ||:|.||.|:..|:..|:.|
  Rat    57 SSGDLPLQDSPDSSSNPKLKLSGPEADEGPEKKEENKVLT-----KKQKMRTVFSQAQLCALKDR 116

  Fly   270 FLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKR 308
            |..|:|||.....:::..|.||..||.|||||:|.|.||
  Rat   117 FQRQRYLSLQQMQDLSTILNLSYKQVKTWFQNQRMKCKR 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 40/104 (38%)
Homeodomain 252..308 CDD:459649 24/55 (44%)
NanogNP_001094251.1 Homeodomain 100..155 CDD:459649 24/54 (44%)
PTZ00395 <184..>291 CDD:185594
Blue background indicates that the domain is not in the aligned region.

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