DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbl and Antp

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:323 Identity:66/323 - (20%)
Similarity:104/323 - (32%) Gaps:113/323 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIPLVPNCPPPAALHTFLSPALLHSYEQR 126
            |:|.::.:..:...|...|::..|...|.|..|.:|.:|                    ...:|:
  Fly    71 GQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQLGVP--------------------QQQQQQ 115

  Fly   127 LAWDYQRQLQEHFQAQAQLL--------------RQMTLNPAIIAS--------------EDGSS 163
            .....|.|.|:..|...|.|              :|....|.:.||              |.||.
  Fly   116 QQQPSQNQQQQQAQQAPQQLQQQLPQVTQQVTHPQQQQQQPVVYASCKLQAAVGGLGMVPEGGSP 180

  Fly   164 ERSQRSSSSNGSTECCSP-----TQA----------EKVEKRSQEDRMEVPKKSPEEQPKGA--- 210
            ....:.|..:.:.:...|     .||          :..|.......|.:.::.....|.||   
  Fly   181 PLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQ 245

  Fly   211 ----------------------------SKSSG-DTPLDALFQLSTKNFDEEQDPATLNIFATRS 246
                                        |:||| .:|   |:......|.:.|:           
  Fly   246 GMMHQGQGPPQMHQGHPGQHTPPSQNPNSQSSGMPSP---LYPWMRSQFGKCQE----------- 296

  Fly   247 NPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRD 309
                :::.|..:|..|..||||.|.:.:||:...|.|||..|.|:..|:..||||||.|.|::
  Fly   297 ----RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 36/136 (26%)
Homeodomain 252..308 CDD:459649 24/55 (44%)
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 22/162 (14%)
Homeodomain 298..354 CDD:459649 24/55 (44%)

Return to query results.
Submit another query.