DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and HOXD13

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_000514.2 Gene:HOXD13 / 3239 HGNCID:5136 Length:343 Species:Homo sapiens


Alignment Length:274 Identity:64/274 - (23%)
Similarity:96/274 - (35%) Gaps:71/274 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 ALINERLQIPLVPNCPPP----AALHTFLSPALLHSYEQRLAWDYQRQLQEHF--------QAQA 143
            |::..|.:.|....||.|    ||.....:|||.:.|              ||        .:..
Human    93 AVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGY--------------HFGNGYYSCRMSHG 143

  Fly   144 QLLRQMTLNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKSPEEQPK 208
            ..|:|..|..:..||..|.........|...|    |...|.:|..|::|........||.:...
Human   144 VGLQQNALKSSPHASLGGFPVEKYMDVSGLAS----SSVPANEVPARAKEVSFYQGYTSPYQHVP 204

  Fly   209 G-----ASKSSGDTPLDALFQLSTKNFDEEQDPATL------NIFATRSNP-------------- 248
            |     ::..||:...:|...:      |.....||      .::.|:..|              
Human   205 GYIDMVSTFGSGEPRHEAYISM------EGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDV 263

  Fly   249 ----------KKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRR 303
                      ::.||.|..:|..|:.|||..:...|:::...|..|:....||..||..||||||
Human   264 ALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRR 328

  Fly   304 AKLKRDMEELKKDV 317
            .|.|:.:.:||..|
Human   329 VKDKKIVSKLKDTV 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 35/147 (24%)
Homeodomain 252..308 CDD:459649 22/55 (40%)
HOXD13NP_000514.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28
polyalanine repeat 57..71
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..115 6/21 (29%)
HoxA13_N <100..172 CDD:463521 18/85 (21%)
Homeodomain 277..333 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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