DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and nkx2.2a

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571497.2 Gene:nkx2.2a / 30697 ZFINID:ZDB-GENE-980526-403 Length:273 Species:Danio rerio


Alignment Length:215 Identity:60/215 - (27%)
Similarity:91/215 - (42%) Gaps:42/215 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 MTLNPAIIASEDGSS--------ERSQRSSSSNGSTECCSPTQAEK----VEKRSQEDRMEVPKK 201
            |..|.::..::.|.|        :.:....|..|:.|....::|.|    :.:...|:...:|.|
Zfish     1 MLQNMSLTNTKTGFSVKDILDLPDTNDEEGSITGTEEDTEGSEATKTPGVLVQSPLENVQNLPLK 65

  Fly   202 SP----EEQP---------------KGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSN 247
            :|    .:.|               .|.|.:|.||        |.|:.:...|.:..|...|.||
Zfish    66 NPFYDNSDNPYTRWLATTDSIQYSLHGLSANSQDT--------SAKSPEPSADESPDNDKETSSN 122

  Fly   248 PK---KKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRD 309
            ..   ||||.|..|:..|.:|||:||..|:|||..:|:.:|..:.|:..||..||||.|.|:||.
Zfish   123 GSDSGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRA 187

  Fly   310 MEELKKDVQCEKIPDQSADP 329
            ..|...:|.....|.:.|.|
Zfish   188 RAEKGMEVTHLPSPRRVAVP 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 47/142 (33%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
nkx2.2aNP_571497.2 COG5576 93..218 CDD:227863 45/123 (37%)
Homeodomain 130..186 CDD:459649 25/55 (45%)

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