DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxa13b

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571269.2 Gene:hoxa13b / 30438 ZFINID:ZDB-GENE-980526-365 Length:289 Species:Danio rerio


Alignment Length:113 Identity:33/113 - (29%)
Similarity:55/113 - (48%) Gaps:15/113 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 SPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFEL 266
            ||...||..::||      .|::.|.::.....|.|::         ::.||.|..:|..|:.||
Zfish   189 SPVYCPKDQTQSS------TLWKSSIQDTVSGTDGASV---------RRGRKKRVPYTKVQLKEL 238

  Fly   267 EKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELK 314
            |:.:...|:::...|..|:....|:..||..||||||.|.|:.:.:.|
Zfish   239 EREYATNKFITKDKRRRISAHTNLTERQVTIWFQNRRVKEKKVVNKYK 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 31/109 (28%)
Homeodomain 252..308 CDD:459649 21/55 (38%)
hoxa13bNP_571269.2 HoxA13_N 27..131 CDD:463521
Homeodomain 224..280 CDD:459649 21/55 (38%)
Blue background indicates that the domain is not in the aligned region.

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