DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxc11a

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571240.1 Gene:hoxc11a / 30403 ZFINID:ZDB-GENE-990415-111 Length:306 Species:Danio rerio


Alignment Length:151 Identity:41/151 - (27%)
Similarity:72/151 - (47%) Gaps:23/151 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 SSSNGSTECCSPTQAEKVEKRSQE----DRMEVPKKSPEEQPKGASKSSGDTPLDALFQLSTKNF 230
            |:.|.|..|...::..|:|..||:    .....|:|.||::.:..:..|       ....:||:.
Zfish   164 STDNQSEHCLQKSEMNKLETSSQQPTAVSAAREPEKDPEDEEEHTNSGS-------CTSAATKDG 221

  Fly   231 DEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQV 295
            :..:        ::.|:..:.||.|..::..||.|||:.|.:..|::...|.:::..|.|::.||
Zfish   222 NASK--------SSHSSTPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQV 278

  Fly   296 ITWFQNRRAKLKRDMEELKKD 316
            ..||||||.|.|:    |.:|
Zfish   279 KIWFQNRRMKEKK----LSRD 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 29/111 (26%)
Homeodomain 252..308 CDD:459649 22/55 (40%)
hoxc11aNP_571240.1 DUF3528 42..167 CDD:432284 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..238 14/75 (19%)
Homeodomain 235..291 CDD:459649 22/55 (40%)

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