DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxa11b

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571222.1 Gene:hoxa11b / 30382 ZFINID:ZDB-GENE-990415-4 Length:283 Species:Danio rerio


Alignment Length:268 Identity:60/268 - (22%)
Similarity:105/268 - (39%) Gaps:54/268 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 AIPNALPGVPAPLALINERLQIPLVPNCPPPAALHTFLSPALL---------HSYEQRLAWDYQR 133
            ::|..||..|:               :||...:..|...|.:.         ::.:....|..:.
Zfish    30 SLPPFLPQTPS---------------SCPMTYSYSTSSLPQVQSVREVSFRDYAIDTSSKWHSRG 79

  Fly   134 QLQEHFQAQAQLLRQMTLNPAIIA---SEDGS---SERSQRSSSSNGST----------ECCSPT 182
            .|...:..:..:.|:...||..:.   |::.|   ...|..:|:..||.          :....|
Zfish    80 NLPHCYATEDMVHRECLSNPGTLGDMLSKNNSVLYHSNSSHTSNVYGSVGRNGVLPQAFDQFFET 144

  Fly   183 QAEKVEKRSQEDRME-VPKKSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLN---IFA 243
            ....||.:..|..:: ...|:|.....|:....|....:...:.|:      .:|::.|   .|:
Zfish   145 AYGNVENQPTEHPVDRATSKAPPPAESGSDSCRGTDETERCEETSS------PEPSSGNNEDKFS 203

  Fly   244 TRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKR 308
            ..||.:|.||.|..:|..||.|||:.|.:..|::...|.:::..|.|::.||..||||||.|.|:
Zfish   204 GSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 268

  Fly   309 DMEELKKD 316
                |.:|
Zfish   269 ----LNRD 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 35/114 (31%)
Homeodomain 252..308 CDD:459649 23/55 (42%)
hoxa11bNP_571222.1 DUF3528 26..151 CDD:432284 21/135 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 150..215 15/70 (21%)
Homeodomain 212..268 CDD:459649 23/55 (42%)

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