DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxd9a

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571201.3 Gene:hoxd9a / 30350 ZFINID:ZDB-GENE-990415-121 Length:262 Species:Danio rerio


Alignment Length:158 Identity:54/158 - (34%)
Similarity:71/158 - (44%) Gaps:20/158 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 SSSSNGSTECCSP---------TQAEKVEKRSQEDRMEVPKKSPEEQPKGASKSSGDTPLDALFQ 224
            |..|...||...|         |:...|.:.|.....|...|:.||: .|:..||...|.|...|
Zfish   114 SRHSGTKTESLPPKRTESAAFETETPSVPEFSLNAVSESADKATEER-VGSDNSSHGEPKDEKQQ 177

  Fly   225 LSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLG 289
                   ::.||:  |..|...:.:..||.|..:|..|..||||.|||..||:...|.|:|..|.
Zfish   178 -------QQLDPS--NPAANWIHARSTRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILN 233

  Fly   290 LSNAQVITWFQNRRAKLKR-DMEELKKD 316
            |:..||..||||||.|:|: :.|...||
Zfish   234 LTERQVKIWFQNRRMKMKKMNRERSSKD 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 42/112 (38%)
Homeodomain 252..308 CDD:459649 28/55 (51%)
hoxd9aNP_571201.3 Hox9_act 1..182 CDD:461369 18/75 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..187 21/82 (26%)
Homeodomain 196..252 CDD:459649 28/55 (51%)

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