DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxb9a

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_571196.2 Gene:hoxb9a / 30344 ZFINID:ZDB-GENE-990415-109 Length:249 Species:Danio rerio


Alignment Length:250 Identity:60/250 - (24%)
Similarity:88/250 - (35%) Gaps:78/250 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 PLVPNC-----PP-----------------PAALHTFLSPALLHSYEQRL--AWDYQRQLQEHFQ 140
            |..|:|     ||                 ||..|.::....:.|.:.|.  .|.......|...
Zfish    45 PEFPSCSFQPKPPVFSSSWSPFSSHASNGLPAVYHPYIPTQPVPSTDTRYLRTWLDCAPRAEPLP 109

  Fly   141 AQAQ-----LLRQMTLNPAIIASE----DGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRM 196
            .|.|     ||..:...|.::...    :.|:.|...|..|.|.                 ||..
Zfish   110 GQGQVKMEPLLGHLGEPPKLVGQHEYILESSTAREINSGHSAGF-----------------EDNK 157

  Fly   197 EVPKKSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQ 261
            ::.:.|.:                       |...::.||:. |....||:    ||.|..:|..
Zfish   158 DICEGSED-----------------------KEGPDQNDPSA-NWLHARSS----RKKRCPYTKY 194

  Fly   262 QIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKD 316
            |..||||.||:..||:...|.|:|..|.|:..||..||||||.|:|:..::..|:
Zfish   195 QTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRMKMKKMNKDQPKE 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 35/110 (32%)
Homeodomain 252..308 CDD:459649 27/55 (49%)
hoxb9aNP_571196.2 Hox9_act 1..171 CDD:461369 26/165 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..182 10/76 (13%)
Homeodomain 185..241 CDD:459649 27/55 (49%)

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