DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Nkx1-1

DIOPT Version :9

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_234082.6 Gene:Nkx1-1 / 298981 RGDID:1564874 Length:443 Species:Rattus norvegicus


Alignment Length:317 Identity:79/317 - (24%)
Similarity:124/317 - (39%) Gaps:100/317 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 SSPVRVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIPLVPNC--PPPA 109
            ::|.|..|||:.|||    :.::...:..|..:..  |.|||..|        |..|..  |.||
  Rat    77 AAPPRPTSFSVLDIL----DPNKFNSRRRRCVLLG--PVVPATCA--------PCAPAACVPVPA 127

  Fly   110 ALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMTLNPAIIASEDGS----------SE 164
            |  :..||                        :|:|.|:.......:|:..|:          ::
  Rat   128 A--SGRSP------------------------RAELERRALSAATGVAAATGAEPTSTGDSYRAD 166

  Fly   165 RSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKSPE-------EQPKGASKSSG--DTPLD 220
            .::.:..|:||..  ||| |:..::..:||..|  .::||       |:|:|.|...|  .:...
  Rat   167 EAEANGYSSGSGR--SPT-ADSEDEAPEEDEDE--DQAPEVQDVQGTEEPRGGSGGLGARGSGCS 226

  Fly   221 ALFQLSTKNFDEEQDP-----------------------ATLNIFATRSNPKKK----------- 251
            ...::.....||...|                       :|....|..:.||:|           
  Rat   227 GAAEVEASPVDEAAAPGPRGNSPGAPGPPVTAAGAGNAGSTPQGAAVATKPKRKRTGSDSKSGKP 291

  Fly   252 RKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKR 308
            |::|||||.:|:..||.:|...:|||..:|..:|..|.|:..||..||||||.|.|:
  Rat   292 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 39/139 (28%)
Homeobox 254..307 CDD:278475 25/52 (48%)
Nkx1-1XP_234082.6 Homeobox 295..347 CDD:278475 25/51 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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