DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Pdx1

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_074043.4 Gene:Pdx1 / 29535 RGDID:62387 Length:283 Species:Rattus norvegicus


Alignment Length:73 Identity:33/73 - (45%)
Similarity:47/73 - (64%) Gaps:2/73 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 ATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLK 307
            |..:.|::.:::|||:|..|:.||||.||:.||:|...|.|:|..|.|:...:..||||||.|.|
  Rat   138 AYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 202

  Fly   308 RDMEELKK 315
            :  ||.||
  Rat   203 K--EEDKK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 33/73 (45%)
Homeodomain 252..308 CDD:459649 26/55 (47%)
Pdx1NP_074043.4 Transactivation domain 13..73
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 36..81
Antp-type hexapeptide 118..123
Homeodomain 147..203 CDD:459649 26/55 (47%)
Nuclear localization signal. /evidence=ECO:0000250 197..203 3/5 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..283 5/10 (50%)
Blue background indicates that the domain is not in the aligned region.

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