DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbl and tlx3b

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_739572.2 Gene:tlx3b / 266965 ZFINID:ZDB-GENE-021021-1 Length:300 Species:Danio rerio


Alignment Length:251 Identity:74/251 - (29%)
Similarity:103/251 - (41%) Gaps:60/251 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 SEDGSSERSQRSSSSNGSTECC----SPTQAEKV----------------EKRSQEDR------- 195
            |...|||.|..|||::|.   |    |||.|...                |:.|....       
Zfish    43 STRNSSESSSGSSSASGG---CYHLGSPTGASATPYTTLTGTFHGIAAPYEESSPYGMNLTLAPG 104

  Fly   196 --MEVPKKSP---EEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFAT---------RS 246
              :.||...|   ...|..||...|...|...:..|::.|.:::..|.|..|..         ..
Zfish   105 GVIRVPAHRPLAAAVPPPMASAVPGLGSLSFPWMESSQRFAKDRFAAALTPFTVARRIGHPYQNR 169

  Fly   247 NPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRD-- 309
            .|.|::|.||:|:..||.||||||..||||:.|:|..:|..|.:::|||.|||||||.|.:|.  
Zfish   170 TPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTA 234

  Fly   310 -------------MEELKKDVQCEKIPDQ-SADPNRSHHNHPHYHQQHQHYAHMQS 351
                         |.:|:.|...:.:.|. ..||...|::.....|..|.:|..:|
Zfish   235 EEREAERQQANRLMIQLQHDAFQKSLTDSVPTDPLCIHNSSLFALQNLQPWASEES 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 50/150 (33%)
Homeodomain 252..308 CDD:459649 31/55 (56%)
tlx3bNP_739572.2 Homeodomain 175..231 CDD:459649 31/55 (56%)

Return to query results.
Submit another query.