DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Npm1

DIOPT Version :9

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_037124.1 Gene:Npm1 / 25498 RGDID:3192 Length:292 Species:Rattus norvegicus


Alignment Length:265 Identity:50/265 - (18%)
Similarity:88/265 - (33%) Gaps:74/265 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 GVPAPLALINERLQI-PLVP----NCPPPAALHTFLSPALLHSYEQRL-AWDYQRQLQEHFQAQA 143
            |.|..:.|...::.: |.|.    ...||..|........:|...|.| |.:...:.::..:...
  Rat    69 GSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEDEEDV 133

  Fly   144 QLLRQMTLNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQE--------------- 193
            :||              |.|  .:||:...|:.   .|.:..|:::...|               
  Rat   134 KLL--------------GMS--GKRSAPGGGNK---VPQKKVKLDEDDDEDDEDDEDDEDDDDDD 179

  Fly   194 -DRMEVPKKSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTA 257
             |..|..:|.|      ..||..|||.... |.|.:| .::..|:|.......|..|:::..:|.
  Rat   180 FDEEETEEKVP------VKKSVRDTPAKNA-QKSNQN-GKDLKPSTPRSKGQESFKKQEKTPKTP 236

  Fly   258 FTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCEKI 322
            .....:.:::.:.  |..:      |..|.|....|:.|.:.:|                 |.::
  Rat   237 KGPSSVEDIKAKM--QASI------EKGGSLPKVEAKFINYVKN-----------------CFRM 276

  Fly   323 PDQSA 327
            .||.|
  Rat   277 TDQEA 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 24/122 (20%)
Homeobox 254..307 CDD:278475 8/52 (15%)
Npm1NP_037124.1 Required for interaction with SENP3. /evidence=ECO:0000250 1..185 23/134 (17%)
Necessary for interaction with APEX1. /evidence=ECO:0000250 1..117 10/47 (21%)
Nucleoplasmin 18..117 CDD:397268 10/47 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 138..248 24/122 (20%)
Nuclear localization signal. /evidence=ECO:0000255 152..157 1/4 (25%)
Nuclear localization signal. /evidence=ECO:0000255 190..196 3/11 (27%)
Required for nucleolar localization. /evidence=ECO:0000250 241..292 11/66 (17%)
NPM1-C 243..289 CDD:406641 11/64 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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